Scripts

The supported command-line workflow for the Python package is the packaged module entrypoint:

python -m eclosure.experiments --help

Install the experiment dependencies first:

python -m pip install "eclosure[experiments]"

Simulation mode

Run the simulation grid used by the paper:

python -m eclosure.experiments --mode simulation --alpha 0.1 --out-dir figures

Useful options:

• --sim-config: choose named simulation configurations, or use all.
• --n-trials: set the number of trials per grid point.
• --n-cores: control parallel worker count.
• --out-dir: choose the directory where generated outputs are written.

Real-data mode

Analyze packaged or custom e-value CSV files:

python -m eclosure.experiments --mode real --alpha 0.1 --out-dir figures

Useful options:

• --data-dir: point to a directory containing *_evalues.csv files.
• --col-name: choose the e-value column name in those CSV files.
• --alpha: set the target FDR level.

The real-data workflow writes results under OUT_DIR/real/ and also prints a summary table to stdout.